PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g75123.1.p
Common NameBRADI_1g75123, LOC104582432
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 190aa    MW: 19955.3 Da    PI: 6.2301
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g75123.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000563355123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C  C++ F++   L  H+++H
  Bradi1g75123.1.p 33 YDCVFCKRGFTTAQALGGHMNVH 55
                      88*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-63060No hitNo description
PROSITE profilePS5015712.0093360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEDAETGRSP GAAPAMMTSS SPAPVPAASR RYYDCVFCKR GFTTAQALGG HMNVHRRDRP  60
KPAAAPDIDA PTATGCYMAY PWPSAPPPQP PMRCGGSSFV LSGLRCAGNN AEVAVWPAAA  120
AAAGSSPSPR PRELSLFGAD NDDDDGHDDH DLRLGLGCHG SGLRSPEEGP EPERNMLDLE  180
LRLGPRPRH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230271.11e-134PREDICTED: uncharacterized protein LOC104582432
TrEMBLA0A0Q3HLA11e-134A0A0Q3HLA1_BRADI; Uncharacterized protein
STRINGSi025069m1e-27(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Representative plantOGRP1198045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-09C2H2 family protein